open source manycores bioinformatics
biomanycores is a repository of open-source parallel bioinformatics code in OpenCL and in CUDA. We would like to bridge the gap between researches in high-performance-computing and platforms of usual bioinformaticians and biologists, in particular by giving access to high-performance prototypes through Bio* frameworks.
Public git repository is at git clone git://scm.gforge.inria.fr/biomanycores/biomanycores.git, and the software documentation is available online. Developers can be reached through contact at biomanycores.org. We search for help in the following domains:
biomanycores is a project of Bonsai bioinformatics group (LIFL, CNRS, Université Lille 1, INRIA Lille), in collaboration with Dolphin and Symbiose groups. We are funded by the INRIA ADT campaign 2010-2012.
If you use biomanycores, please cite: Mathieu Giraud, Stéphane Janot, Jean-Frédéric Berthelot, Charles Deltel, Laetitia Jourdan, Dominique Lavenier, Hélène Touzet, Jean-Stéphane Varré, Biomanycores, open-source parallel code for many-core bioinformatics, BOSC 2011.